species:   Fugra
pid:       PID0892
parent:    FgmilR-7dps-71
paralog:   
locus:     NC_026476.1:3865001-3865296
matures:   ['UCAGCGAAGGUGUAGCAGGCAUG', 'UGUCGACUUGAACCAGGCGUUGAAG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026476.1:3865001-3865296

2 out of bounds
11 alignments
2 proper strand
2 stranded perfect matches

      *************************                                                                                                                                                                                                                                            ***************************  
GCCAUUGUUCAGCGAAGGUGUAGCAGGCAUGCUCCAAGAGAGUUUGAAUCUCAGUCAGCACAUAUGUUUGGACCGGAAGACCCAGACAUCCAUCCUUUUUGGCGGCUGGCUGUUUAGGCGCCCUCUUGUACGUGCUCCUGUUGUACGUGCUGAAGGGCCUAUCGGGAGAUGGCGAAAAACUGGGCCUAGGCCUUUCCCGCCUAGGACCGCAGCGCCAACUUGGGGGAUCAUCAGCAGGCGAAGAAGUUGGGGUAACAGGGGGGGAAGAAUGUCGACUUGAACCAGGCGUUGAAGGC
(((....(((((((..(((..((..(((((.(((...))).(((((((...((((((((....((((((((..(....)..))))))))(((.......)))..))))))))))))))).(((((((((...((((((..((...(.((((((.(..(((.(((((...(((((.....((((((((((((.......))))))).)).)))))))).))))))))..).)))))).)....))....))))))))))))))).....)))))..))...)))...))))))))))
--------UCAGCGAAGGUGUAGCAGGCAUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUCGACUUGAACCAGGCGUUGAAG-- l=25 a=0 c*
--------------------------------------------------------------UAUGUUUGGACCGGAAGACCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=2 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUCGACUUGAACCAGGCGUUGAAG-- l=25 a=0 ma*

--------------------------------------------------------------UAUGUUUGGACCGGAAGACCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=2 (ma)

mb-00010
ax-1001011
ku-01
ss-111111001100
fn-001
